STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY65193.1Long-chain acyl-CoA synthetase. (641 aa)    
Predicted Functional Partners:
SCX96904.1
Amino acid adenylation domain-containing protein.
 
 
0.956
SCY54637.1
Enoyl-(Acyl carrier protein) reductase.
  
 0.887
SCY54624.1
Nitronate monooxygenase.
   
 0.861
SCX96933.1
Amino acid adenylation domain-containing protein.
  
 
0.757
SCY84777.1
Signal transduction histidine kinase.
  
 
  0.709
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.706
SCY38975.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.690
SCY57686.1
Signal transduction histidine kinase.
  
  0.680
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.662
SCX77681.1
3-deoxy-D-manno-octulosonic acid kinase.
    
 0.650
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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