SCY68656.1 protein (Desulfoluna spongiiphila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCY68656.1

NitT/TauT family transport system substrate-binding protein. (339 aa)

Predicted Functional Partners:

SCY68663.1

0.974

SCY68679.1

0.925

SCY68640.1

0.890

SCY68635.1

0.884

SCY68621.1

0.773

SCY58120.1

0.688

SCY57686.1

0.680

SCY84843.1

0.674

SCY48865.1

0.657

SCY38975.1

0.645

Your Current Organism:

Desulfoluna spongiiphila

NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCY38975.1	SCY48865.1	SAMN05216233_10886	SAMN05216233_11060	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.999
SCY38975.1	SCY57686.1	SAMN05216233_10886	SAMN05216233_11262	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.999
SCY38975.1	SCY58120.1	SAMN05216233_10886	SAMN05216233_11289	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SCY38975.1	SCY68656.1	SAMN05216233_10886	SAMN05216233_11676	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	NitT/TauT family transport system substrate-binding protein.	0.645
SCY38975.1	SCY84843.1	SAMN05216233_10886	SAMN05216233_12656	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	PAS domain S-box-containing protein.	0.999
SCY48865.1	SCY38975.1	SAMN05216233_11060	SAMN05216233_10886	Signal transduction histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
SCY48865.1	SCY57686.1	SAMN05216233_11060	SAMN05216233_11262	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SCY48865.1	SCY58120.1	SAMN05216233_11060	SAMN05216233_11289	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SCY48865.1	SCY68656.1	SAMN05216233_11060	SAMN05216233_11676	Signal transduction histidine kinase.	NitT/TauT family transport system substrate-binding protein.	0.657
SCY48865.1	SCY84843.1	SAMN05216233_11060	SAMN05216233_12656	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SCY57686.1	SCY38975.1	SAMN05216233_11262	SAMN05216233_10886	Signal transduction histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
SCY57686.1	SCY48865.1	SAMN05216233_11262	SAMN05216233_11060	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SCY57686.1	SCY58120.1	SAMN05216233_11262	SAMN05216233_11289	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SCY57686.1	SCY68656.1	SAMN05216233_11262	SAMN05216233_11676	Signal transduction histidine kinase.	NitT/TauT family transport system substrate-binding protein.	0.680
SCY57686.1	SCY84843.1	SAMN05216233_11262	SAMN05216233_12656	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SCY58120.1	SCY38975.1	SAMN05216233_11289	SAMN05216233_10886	Diguanylate cyclase (GGDEF) domain-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
SCY58120.1	SCY48865.1	SAMN05216233_11289	SAMN05216233_11060	Diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.999
SCY58120.1	SCY57686.1	SAMN05216233_11289	SAMN05216233_11262	Diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.999
SCY58120.1	SCY68656.1	SAMN05216233_11289	SAMN05216233_11676	Diguanylate cyclase (GGDEF) domain-containing protein.	NitT/TauT family transport system substrate-binding protein.	0.688
SCY58120.1	SCY84843.1	SAMN05216233_11289	SAMN05216233_12656	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.999