STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY68721.1Hypothetical protein. (975 aa)    
Predicted Functional Partners:
SCY68768.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.825
SCY68755.1
Type IV pilus assembly protein PilW.
 
  
 0.806
SCY68748.1
Hypothetical protein.
  
  
 0.777
SCY68705.1
Hypothetical protein.
       0.757
SCY70485.1
Type IV pilus assembly protein PilO.
  
  
 0.732
SCY68730.1
PilX N-terminal.
       0.727
SCY86178.1
Type IV pilus assembly protein PilA.
 
  
 0.716
SCX93478.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.683
SCX93456.1
Transglutaminase-like enzyme, putative cysteine protease.
  
     0.657
SCX93222.1
Hypothetical protein.
  
     0.654
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.