STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY70492.1Type IV pilus assembly protein PilN. (195 aa)    
Predicted Functional Partners:
SCY70502.1
Type IV pilus assembly protein PilM.
 
 0.999
SCY70469.1
Tfp pilus assembly protein PilP.
 
 
 0.998
SCY70485.1
Type IV pilus assembly protein PilO.
 
 
 0.998
SCY70462.1
Type IV pilus assembly protein PilQ.
 
 
 0.996
SCY82593.1
Type II secretory pathway, component PulL.
  
 0.971
SCX94637.1
LysM domain-containing protein.
  
 
   0.938
SCY27834.1
Type IV pilus assembly protein PilC.
 
 
 
 0.796
SCY71971.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 
 0.753
SCY82492.1
General secretion pathway protein F.
   
 
 0.751
SCY40785.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 
 0.731
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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