STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY76128.1SH3 domain-containing protein. (245 aa)    
Predicted Functional Partners:
SCY76111.1
Oxygen tolerance.
   
 0.992
SCY76093.1
Ca-activated chloride channel family protein.
 
   
 0.941
SCY76085.1
Ca-activated chloride channel family protein.
 
     0.901
SCY76067.1
Hypothetical protein.
 
     0.778
SCY76050.1
Protein of unknown function DUF58.
 
     0.743
SCY84843.1
PAS domain S-box-containing protein.
 
  
  0.679
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.673
SCY48865.1
Signal transduction histidine kinase.
 
  
 0.631
SCX83497.1
PAS domain S-box-containing protein.
    
 0.617
SCY83839.1
Tetratricopeptide repeat-containing protein.
    
 0.596
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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