STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY76203.1Diguanylate cyclase (GGDEF) domain-containing protein. (444 aa)    
Predicted Functional Partners:
SCY52880.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 0.996
SCY58120.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.986
SCY87399.1
PAS domain S-box-containing protein.
 
 0.979
SCY84777.1
Signal transduction histidine kinase.
 
 
 0.977
SCY87703.1
PAS domain S-box-containing protein.
 0.977
SCY80410.1
Signal transduction histidine kinase.
 
 
 0.975
SCY12674.1
PAS domain S-box-containing protein.
 0.974
SCY32427.1
Signal transduction histidine kinase.
 
 0.972
SCX83497.1
PAS domain S-box-containing protein.
 
 0.968
SCY88960.1
PAS domain S-box-containing protein.
 
 0.966
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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