STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY78379.1AraC-type DNA-binding protein. (303 aa)    
Predicted Functional Partners:
SCY68836.1
Transcriptional regulator, AraC family.
  
     0.763
SCY78750.1
AraC-type DNA-binding protein.
  
     0.754
SCY04513.1
Transcriptional regulator, AraC family.
  
     0.741
SCY78608.1
AraC-type DNA-binding protein.
  
     0.718
SCY60419.1
AraC-type DNA-binding protein.
  
     0.698
SCX79035.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.663
SCY55326.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.663
SCY83877.1
NADPH-dependent glutamate synthase beta chain.
    
  0.648
SCY38975.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.647
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.641
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.