STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY81630.1PilX N-terminal. (214 aa)    
Predicted Functional Partners:
SCY81621.1
Type IV pilus assembly protein PilY1.
  
  
 0.871
SCY81637.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.822
SCY81651.1
Type IV pilus assembly protein PilW.
  
  
 0.820
SCY81662.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.742
SCY81611.1
Hypothetical protein.
       0.737
SCY86178.1
Type IV pilus assembly protein PilA.
  
  
 0.612
SCY81543.1
Type IV pilus assembly protein PilY1.
  
  
 0.562
SCY68748.1
Hypothetical protein.
  
  
 0.535
SCY81571.1
General secretion pathway protein I.
  
  
 0.535
SCX78390.1
Hypothetical protein.
  
  
 0.529
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.