SCY88225.1 protein (Desulfoluna spongiiphila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCY88225.1

Phage tail tape measure protein, TP901 family, core region. (826 aa)

Predicted Functional Partners:

SCY88292.1

0.928

SCY88249.1

0.882

SCY88238.1

0.785

SCY88261.1

0.779

SCY88337.1

0.774

SCY88281.1

0.750

SCY88271.1

0.748

SCY88299.1

0.741

SCY88352.1

0.726

SCX75686.1

0.692

Your Current Organism:

Desulfoluna spongiiphila

NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCX75686.1	SCY88225.1	SAMN05216233_10154	SAMN05216233_1327	Phage tail-collar fibre protein.	Phage tail tape measure protein, TP901 family, core region.	0.692
SCX75686.1	SCY88292.1	SAMN05216233_10154	SAMN05216233_13213	Phage tail-collar fibre protein.	Uncharacterized phage protein gp47/JayE.	0.695
SCY88225.1	SCX75686.1	SAMN05216233_1327	SAMN05216233_10154	Phage tail tape measure protein, TP901 family, core region.	Phage tail-collar fibre protein.	0.692
SCY88225.1	SCY88238.1	SAMN05216233_1327	SAMN05216233_1328	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.785
SCY88225.1	SCY88249.1	SAMN05216233_1327	SAMN05216233_1329	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.882
SCY88225.1	SCY88261.1	SAMN05216233_1327	SAMN05216233_13210	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.779
SCY88225.1	SCY88271.1	SAMN05216233_1327	SAMN05216233_13211	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.748
SCY88225.1	SCY88281.1	SAMN05216233_1327	SAMN05216233_13212	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.750
SCY88225.1	SCY88292.1	SAMN05216233_1327	SAMN05216233_13213	Phage tail tape measure protein, TP901 family, core region.	Uncharacterized phage protein gp47/JayE.	0.928
SCY88225.1	SCY88299.1	SAMN05216233_1327	SAMN05216233_13214	Phage tail tape measure protein, TP901 family, core region.	Phage tail protein (Tail_P2_I).	0.741
SCY88225.1	SCY88337.1	SAMN05216233_1327	SAMN05216233_13215	Phage tail tape measure protein, TP901 family, core region.	EPTP domain-containing protein.	0.774
SCY88225.1	SCY88352.1	SAMN05216233_1327	SAMN05216233_13216	Phage tail tape measure protein, TP901 family, core region.	Hypothetical protein.	0.726
SCY88238.1	SCY88225.1	SAMN05216233_1328	SAMN05216233_1327	Hypothetical protein.	Phage tail tape measure protein, TP901 family, core region.	0.785
SCY88238.1	SCY88249.1	SAMN05216233_1328	SAMN05216233_1329	Hypothetical protein.	Hypothetical protein.	0.786
SCY88238.1	SCY88261.1	SAMN05216233_1328	SAMN05216233_13210	Hypothetical protein.	Hypothetical protein.	0.785
SCY88238.1	SCY88271.1	SAMN05216233_1328	SAMN05216233_13211	Hypothetical protein.	Hypothetical protein.	0.741
SCY88238.1	SCY88281.1	SAMN05216233_1328	SAMN05216233_13212	Hypothetical protein.	Hypothetical protein.	0.748
SCY88238.1	SCY88292.1	SAMN05216233_1328	SAMN05216233_13213	Hypothetical protein.	Uncharacterized phage protein gp47/JayE.	0.754
SCY88238.1	SCY88299.1	SAMN05216233_1328	SAMN05216233_13214	Hypothetical protein.	Phage tail protein (Tail_P2_I).	0.753
SCY88238.1	SCY88337.1	SAMN05216233_1328	SAMN05216233_13215	Hypothetical protein.	EPTP domain-containing protein.	0.726