STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY90266.1Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (538 aa)    
Predicted Functional Partners:
SCX79035.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.995
SCY55326.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.995
SCX94934.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.989
SCY67959.1
Succinate dehydrogenase subunit B.
  
 
 0.985
SCY53370.1
Dissimilatory adenylylsulfate reductase alpha subunit precursor.
  
 
 0.971
SCY67975.1
Succinate dehydrogenase subunit A.
  
 
 0.971
SCY54749.1
Pyruvate carboxylase subunit B.
    
 0.948
SCY53650.1
Pyruvate carboxylase subunit B.
    
 0.948
SCY21451.1
Formate dehydrogenase major subunit.
    
 0.942
SCY04424.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
 
 
 0.941
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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