STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY90259.1ABC-type multidrug transport system, permease component. (341 aa)    
Predicted Functional Partners:
SCY90250.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.972
SCY60623.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.760
SCY21415.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.698
SCY86199.1
ABC-2 type transport system ATP-binding protein.
  
 
 0.658
SCX98117.1
Cobalt/nickel transport system ATP-binding protein/energy-coupling factor transport system ATP-binding protein/energy-coupling factor transport system ATP-binding protein.
  
 
 0.648
SCY86690.1
Hypothetical protein.
  
 
 0.648
SCX78482.1
YcaO-type kinase domain-containing protein.
 
  
 0.595
SCY33096.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.591
SCY54637.1
Enoyl-(Acyl carrier protein) reductase.
  
  
 0.571
SCX90176.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.539
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.