STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY91293.1Phage portal protein, lambda family. (528 aa)    
Predicted Functional Partners:
SCY91288.1
Signal peptide peptidase SppA.
 
    0.909
SCY01402.1
Phage major capsid protein E.
 
    0.843
SCY44891.1
Phage terminase, large subunit GpA.
  
 0.820
SCY01621.1
Phage terminase, large subunit GpA.
  
 0.808
SCY84270.1
Phage terminase, large subunit GpA.
  
 0.808
SCX84950.1
Phage tail protein, P2 protein I family.
 
  
 0.791
SCX84971.1
Phage-related baseplate assembly protein.
 
   
 0.791
SCX85144.1
Hypothetical protein.
 
   
 0.790
SCX85165.1
Hypothetical protein.
 
  
 0.788
SCX85067.1
Hypothetical protein.
 
   
 0.786
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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