STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN67760.1TIGR01244 family protein. (144 aa)    
Predicted Functional Partners:
SDN67735.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.904
SDN67786.1
Sulfate permease, SulP family.
 
     0.859
SDN67808.1
Hypothetical protein.
 
     0.838
SDN67838.1
Hypothetical protein.
 
     0.834
SDN67710.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.752
SDN67946.1
Cytochrome c.
 
     0.422
SDN90998.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
    
  0.417
SDN67861.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.411
SDN67885.1
Signal transduction histidine kinase.
       0.411
SDO04568.1
Flavodoxin.
    
  0.411
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.