Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN83437.1 | SDN89602.1 | SAMN04487957_102107 | SAMN04487957_102309 | DNA polymerase-3 subunit alpha. | Hypothetical protein. | 0.691 |
SDN83437.1 | SDO39751.1 | SAMN04487957_102107 | SAMN04487957_1065 | DNA polymerase-3 subunit alpha. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.997 |
SDN83437.1 | dnaX | SAMN04487957_102107 | SAMN04487957_10536 | DNA polymerase-3 subunit alpha. | DNA polymerase III, gamma subunit /DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.997 |
SDN89602.1 | SDN83437.1 | SAMN04487957_102309 | SAMN04487957_102107 | Hypothetical protein. | DNA polymerase-3 subunit alpha. | 0.691 |
SDN89602.1 | SDN89636.1 | SAMN04487957_102309 | SAMN04487957_102310 | Hypothetical protein. | Sel1 repeat-containing protein. | 0.738 |
SDN89602.1 | SDN89667.1 | SAMN04487957_102309 | SAMN04487957_102311 | Hypothetical protein. | Predicted oxidoreductase. | 0.669 |
SDN89602.1 | SDN89699.1 | SAMN04487957_102309 | SAMN04487957_102312 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0246 family. | 0.609 |
SDN89602.1 | SDO19239.1 | SAMN04487957_102309 | SAMN04487957_104193 | Hypothetical protein. | Regulator of sigma D; Belongs to the Rsd/AlgQ family. | 0.565 |
SDN89602.1 | SDO28312.1 | SAMN04487957_102309 | SAMN04487957_10544 | Hypothetical protein. | TIGR03503 family protein. | 0.715 |
SDN89602.1 | SDO32998.1 | SAMN04487957_102309 | SAMN04487957_105199 | Hypothetical protein. | Diguanylate cyclase, GGDEF domain. | 0.576 |
SDN89602.1 | SDO39751.1 | SAMN04487957_102309 | SAMN04487957_1065 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.678 |
SDN89602.1 | SDO90096.1 | SAMN04487957_102309 | SAMN04487957_11513 | Hypothetical protein. | Hypothetical protein. | 0.588 |
SDN89602.1 | dnaX | SAMN04487957_102309 | SAMN04487957_10536 | Hypothetical protein. | DNA polymerase III, gamma subunit /DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.635 |
SDN89636.1 | SDN89602.1 | SAMN04487957_102310 | SAMN04487957_102309 | Sel1 repeat-containing protein. | Hypothetical protein. | 0.738 |
SDN89636.1 | SDN89667.1 | SAMN04487957_102310 | SAMN04487957_102311 | Sel1 repeat-containing protein. | Predicted oxidoreductase. | 0.556 |
SDN89636.1 | SDN89699.1 | SAMN04487957_102310 | SAMN04487957_102312 | Sel1 repeat-containing protein. | Hypothetical protein; Belongs to the UPF0246 family. | 0.438 |
SDN89636.1 | SDO32998.1 | SAMN04487957_102310 | SAMN04487957_105199 | Sel1 repeat-containing protein. | Diguanylate cyclase, GGDEF domain. | 0.667 |
SDN89667.1 | SDN89602.1 | SAMN04487957_102311 | SAMN04487957_102309 | Predicted oxidoreductase. | Hypothetical protein. | 0.669 |
SDN89667.1 | SDN89636.1 | SAMN04487957_102311 | SAMN04487957_102310 | Predicted oxidoreductase. | Sel1 repeat-containing protein. | 0.556 |
SDN89667.1 | SDN89699.1 | SAMN04487957_102311 | SAMN04487957_102312 | Predicted oxidoreductase. | Hypothetical protein; Belongs to the UPF0246 family. | 0.588 |
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