STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN90390.1Iron-containing redox enzyme. (230 aa)    
Predicted Functional Partners:
SDN90357.1
Long-chain acyl-CoA synthetase (AMP-forming).
  
 0.992
SDN90320.1
Thermostable hemolysin.
 
   
 0.960
SDN90416.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.956
SDN90445.1
Hypothetical protein.
 
     0.950
SDN90508.1
Signal transduction histidine kinase.
 
     0.874
SDN90479.1
Two-component system, OmpR family, response regulator.
 
     0.819
SDO20231.1
Hypothetical protein.
 
     0.790
SDO43132.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
 
 0.712
SDO40095.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
 
 0.712
SDN90541.1
Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily.
 
     0.711
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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