Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN94116.1 | SDN94159.1 | SAMN04487957_102452 | SAMN04487957_102453 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.947 |
SDN94116.1 | SDN94191.1 | SAMN04487957_102452 | SAMN04487957_102454 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Protein TonB. | 0.706 |
SDN94116.1 | SDN94255.1 | SAMN04487957_102452 | SAMN04487957_102456 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.542 |
SDN94116.1 | SDN94296.1 | SAMN04487957_102452 | SAMN04487957_102457 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.621 |
SDN94116.1 | SDN94357.1 | SAMN04487957_102452 | SAMN04487957_102459 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Rhodanese-related sulfurtransferase. | 0.452 |
SDN94116.1 | gshB | SAMN04487957_102452 | SAMN04487957_102455 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.765 |
SDN94116.1 | secB | SAMN04487957_102452 | SAMN04487957_102458 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.424 |
SDN94159.1 | SDN94116.1 | SAMN04487957_102453 | SAMN04487957_102452 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.947 |
SDN94159.1 | SDN94191.1 | SAMN04487957_102453 | SAMN04487957_102454 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Protein TonB. | 0.772 |
SDN94159.1 | SDN94255.1 | SAMN04487957_102453 | SAMN04487957_102456 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Hypothetical protein. | 0.619 |
SDN94159.1 | SDN94296.1 | SAMN04487957_102453 | SAMN04487957_102457 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.570 |
SDN94159.1 | SDN94357.1 | SAMN04487957_102453 | SAMN04487957_102459 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Rhodanese-related sulfurtransferase. | 0.513 |
SDN94159.1 | gshB | SAMN04487957_102453 | SAMN04487957_102455 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.891 |
SDN94159.1 | secB | SAMN04487957_102453 | SAMN04487957_102458 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.683 |
SDN94191.1 | SDN94116.1 | SAMN04487957_102454 | SAMN04487957_102452 | Protein TonB. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.706 |
SDN94191.1 | SDN94159.1 | SAMN04487957_102454 | SAMN04487957_102453 | Protein TonB. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.772 |
SDN94191.1 | SDN94255.1 | SAMN04487957_102454 | SAMN04487957_102456 | Protein TonB. | Hypothetical protein. | 0.634 |
SDN94191.1 | SDN94296.1 | SAMN04487957_102454 | SAMN04487957_102457 | Protein TonB. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.537 |
SDN94191.1 | SDN94357.1 | SAMN04487957_102454 | SAMN04487957_102459 | Protein TonB. | Rhodanese-related sulfurtransferase. | 0.438 |
SDN94191.1 | gshB | SAMN04487957_102454 | SAMN04487957_102455 | Protein TonB. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.856 |
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