Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO00271.1 | SDO31814.1 | SAMN04487957_10310 | SAMN04487957_105157 | Chorismate mutase. | L-threonine O-3-phosphate decarboxylase. | 0.797 |
SDO00271.1 | SDO69562.1 | SAMN04487957_10310 | SAMN04487957_11033 | Chorismate mutase. | Histidinol-phosphate aminotransferase. | 0.963 |
SDO00271.1 | SDO95311.1 | SAMN04487957_10310 | SAMN04487957_1187 | Chorismate mutase. | Aromatic-amino-acid transaminase. | 0.983 |
SDO00271.1 | aroA | SAMN04487957_10310 | SAMN04487957_10311 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SDO00271.1 | aroB | SAMN04487957_10310 | SAMN04487957_10269 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.933 |
SDO00271.1 | aroC | SAMN04487957_10310 | SAMN04487957_104297 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.991 |
SDO00271.1 | aroK | SAMN04487957_10310 | SAMN04487957_10270 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.958 |
SDO00271.1 | cmk | SAMN04487957_10310 | SAMN04487957_10312 | Chorismate mutase. | Cytidylate kinase. | 0.983 |
SDO00271.1 | hisC | SAMN04487957_10310 | SAMN04487957_107115 | Chorismate mutase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.967 |
SDO00271.1 | serC | SAMN04487957_10310 | SAMN04487957_1039 | Chorismate mutase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.990 |
SDO31814.1 | SDO00271.1 | SAMN04487957_105157 | SAMN04487957_10310 | L-threonine O-3-phosphate decarboxylase. | Chorismate mutase. | 0.797 |
SDO31814.1 | SDO69562.1 | SAMN04487957_105157 | SAMN04487957_11033 | L-threonine O-3-phosphate decarboxylase. | Histidinol-phosphate aminotransferase. | 0.431 |
SDO31814.1 | aroA | SAMN04487957_105157 | SAMN04487957_10311 | L-threonine O-3-phosphate decarboxylase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.979 |
SDO31814.1 | aroB | SAMN04487957_105157 | SAMN04487957_10269 | L-threonine O-3-phosphate decarboxylase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.452 |
SDO31814.1 | aroC | SAMN04487957_105157 | SAMN04487957_104297 | L-threonine O-3-phosphate decarboxylase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.667 |
SDO31814.1 | hisC | SAMN04487957_105157 | SAMN04487957_107115 | L-threonine O-3-phosphate decarboxylase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.432 |
SDO69562.1 | SDO00271.1 | SAMN04487957_11033 | SAMN04487957_10310 | Histidinol-phosphate aminotransferase. | Chorismate mutase. | 0.963 |
SDO69562.1 | SDO31814.1 | SAMN04487957_11033 | SAMN04487957_105157 | Histidinol-phosphate aminotransferase. | L-threonine O-3-phosphate decarboxylase. | 0.431 |
SDO69562.1 | SDO95311.1 | SAMN04487957_11033 | SAMN04487957_1187 | Histidinol-phosphate aminotransferase. | Aromatic-amino-acid transaminase. | 0.938 |
SDO69562.1 | aroA | SAMN04487957_11033 | SAMN04487957_10311 | Histidinol-phosphate aminotransferase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.996 |
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