node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN93464.1 | ruvC | SAMN04487957_102431 | SAMN04487957_103190 | Magnesium chelatase family protein. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.588 |
SDO05796.1 | SDO05830.1 | SAMN04487957_103186 | SAMN04487957_103187 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Putative regulatory protein, FmdB family. | 0.729 |
SDO05796.1 | aspS | SAMN04487957_103186 | SAMN04487957_103188 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.510 |
SDO05796.1 | ruvC | SAMN04487957_103186 | SAMN04487957_103190 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.579 |
SDO05830.1 | SDO05796.1 | SAMN04487957_103187 | SAMN04487957_103186 | Putative regulatory protein, FmdB family. | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.729 |
SDO05830.1 | SDO05888.1 | SAMN04487957_103187 | SAMN04487957_103189 | Putative regulatory protein, FmdB family. | DNA-binding regulatory protein, YebC/PmpR family. | 0.597 |
SDO05830.1 | aspS | SAMN04487957_103187 | SAMN04487957_103188 | Putative regulatory protein, FmdB family. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.769 |
SDO05830.1 | ruvA | SAMN04487957_103187 | SAMN04487957_103191 | Putative regulatory protein, FmdB family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.487 |
SDO05830.1 | ruvC | SAMN04487957_103187 | SAMN04487957_103190 | Putative regulatory protein, FmdB family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.689 |
SDO05830.1 | tolB | SAMN04487957_103187 | SAMN04487957_103197 | Putative regulatory protein, FmdB family. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.456 |
SDO05888.1 | SDO05830.1 | SAMN04487957_103189 | SAMN04487957_103187 | DNA-binding regulatory protein, YebC/PmpR family. | Putative regulatory protein, FmdB family. | 0.597 |
SDO05888.1 | aspS | SAMN04487957_103189 | SAMN04487957_103188 | DNA-binding regulatory protein, YebC/PmpR family. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.806 |
SDO05888.1 | ruvA | SAMN04487957_103189 | SAMN04487957_103191 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.637 |
SDO05888.1 | ruvB | SAMN04487957_103189 | SAMN04487957_103192 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.628 |
SDO05888.1 | ruvC | SAMN04487957_103189 | SAMN04487957_103190 | DNA-binding regulatory protein, YebC/PmpR family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.896 |
SDO05888.1 | tolB | SAMN04487957_103189 | SAMN04487957_103197 | DNA-binding regulatory protein, YebC/PmpR family. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.520 |
aspS | SDO05796.1 | SAMN04487957_103188 | SAMN04487957_103186 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.510 |
aspS | SDO05830.1 | SAMN04487957_103188 | SAMN04487957_103187 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Putative regulatory protein, FmdB family. | 0.769 |
aspS | SDO05888.1 | SAMN04487957_103188 | SAMN04487957_103189 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | DNA-binding regulatory protein, YebC/PmpR family. | 0.806 |
aspS | polA | SAMN04487957_103188 | SAMN04487957_10790 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.478 |