Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN60089.1 | SDO10667.1 | SAMN04487957_101116 | SAMN04487957_103362 | HTH-type transcriptional regulator / antitoxin HigA. | Antitoxin StbD. | 0.476 |
SDN60089.1 | SDO10692.1 | SAMN04487957_101116 | SAMN04487957_103363 | HTH-type transcriptional regulator / antitoxin HigA. | mRNA interferase RelE/StbE. | 0.477 |
SDO10272.1 | SDO10692.1 | SAMN04487957_103347 | SAMN04487957_103363 | Helix-turn-helix. | mRNA interferase RelE/StbE. | 0.825 |
SDO10639.1 | SDO10667.1 | SAMN04487957_103361 | SAMN04487957_103362 | DNA replication terminus site binding protein. | Antitoxin StbD. | 0.563 |
SDO10639.1 | SDO10692.1 | SAMN04487957_103361 | SAMN04487957_103363 | DNA replication terminus site binding protein. | mRNA interferase RelE/StbE. | 0.563 |
SDO10639.1 | coaE | SAMN04487957_103361 | SAMN04487957_103359 | DNA replication terminus site binding protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.765 |
SDO10639.1 | yacG | SAMN04487957_103361 | SAMN04487957_103360 | DNA replication terminus site binding protein. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.865 |
SDO10667.1 | SDN60089.1 | SAMN04487957_103362 | SAMN04487957_101116 | Antitoxin StbD. | HTH-type transcriptional regulator / antitoxin HigA. | 0.476 |
SDO10667.1 | SDO10639.1 | SAMN04487957_103362 | SAMN04487957_103361 | Antitoxin StbD. | DNA replication terminus site binding protein. | 0.563 |
SDO10667.1 | SDO10692.1 | SAMN04487957_103362 | SAMN04487957_103363 | Antitoxin StbD. | mRNA interferase RelE/StbE. | 0.983 |
SDO10667.1 | coaE | SAMN04487957_103362 | SAMN04487957_103359 | Antitoxin StbD. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.434 |
SDO10667.1 | yacG | SAMN04487957_103362 | SAMN04487957_103360 | Antitoxin StbD. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.616 |
SDO10692.1 | SDN60089.1 | SAMN04487957_103363 | SAMN04487957_101116 | mRNA interferase RelE/StbE. | HTH-type transcriptional regulator / antitoxin HigA. | 0.477 |
SDO10692.1 | SDO10272.1 | SAMN04487957_103363 | SAMN04487957_103347 | mRNA interferase RelE/StbE. | Helix-turn-helix. | 0.825 |
SDO10692.1 | SDO10639.1 | SAMN04487957_103363 | SAMN04487957_103361 | mRNA interferase RelE/StbE. | DNA replication terminus site binding protein. | 0.563 |
SDO10692.1 | SDO10667.1 | SAMN04487957_103363 | SAMN04487957_103362 | mRNA interferase RelE/StbE. | Antitoxin StbD. | 0.983 |
SDO10692.1 | coaE | SAMN04487957_103363 | SAMN04487957_103359 | mRNA interferase RelE/StbE. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.434 |
SDO10692.1 | yacG | SAMN04487957_103363 | SAMN04487957_103360 | mRNA interferase RelE/StbE. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.563 |
coaE | SDO10639.1 | SAMN04487957_103359 | SAMN04487957_103361 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | DNA replication terminus site binding protein. | 0.765 |
coaE | SDO10667.1 | SAMN04487957_103359 | SAMN04487957_103362 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Antitoxin StbD. | 0.434 |
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