STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO17506.1DNA-binding transcriptional regulator, GntR family. (236 aa)    
Predicted Functional Partners:
SDO17473.1
formyl-CoA transferase; Belongs to the CoA-transferase III family.
 
     0.765
SDO09017.1
GntR family transcriptional regulator, carbon starvation induced regulator.
  
     0.746
SDN62870.1
DNA-binding transcriptional regulator, GntR family.
  
     0.735
SDO17448.1
TRAP transporter, DctM subunit.
       0.698
SDN62195.1
GntR family transcriptional regulator, glc operon transcriptional activator.
  
    0.618
SDO17418.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.568
SDO17384.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.551
SDO48618.1
Transcriptional regulator, GntR family.
  
    0.548
SDO17352.1
Aconitate hydratase.
  
    0.514
SDO17328.1
hydroxymethylglutaryl-CoA lyase.
       0.482
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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