Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN90178.1 | SDO18742.1 | SAMN04487957_102328 | SAMN04487957_104178 | Aromatic ring-opening dioxygenase, catalytic subunit, LigB family. | Hypothetical protein; Belongs to the pirin family. | 0.728 |
SDO18717.1 | SDO18742.1 | SAMN04487957_104177 | SAMN04487957_104178 | Murein DD-endopeptidase. | Hypothetical protein; Belongs to the pirin family. | 0.507 |
SDO18742.1 | SDN90178.1 | SAMN04487957_104178 | SAMN04487957_102328 | Hypothetical protein; Belongs to the pirin family. | Aromatic ring-opening dioxygenase, catalytic subunit, LigB family. | 0.728 |
SDO18742.1 | SDO18717.1 | SAMN04487957_104178 | SAMN04487957_104177 | Hypothetical protein; Belongs to the pirin family. | Murein DD-endopeptidase. | 0.507 |
SDO18742.1 | SDO18776.1 | SAMN04487957_104178 | SAMN04487957_104179 | Hypothetical protein; Belongs to the pirin family. | DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.645 |
SDO18742.1 | SDO18810.1 | SAMN04487957_104178 | SAMN04487957_104180 | Hypothetical protein; Belongs to the pirin family. | Putative glutathione S-transferase. | 0.490 |
SDO18776.1 | SDO18742.1 | SAMN04487957_104179 | SAMN04487957_104178 | DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Hypothetical protein; Belongs to the pirin family. | 0.645 |
SDO18776.1 | SDO18810.1 | SAMN04487957_104179 | SAMN04487957_104180 | DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Putative glutathione S-transferase. | 0.740 |
SDO18810.1 | SDO18742.1 | SAMN04487957_104180 | SAMN04487957_104178 | Putative glutathione S-transferase. | Hypothetical protein; Belongs to the pirin family. | 0.490 |
SDO18810.1 | SDO18776.1 | SAMN04487957_104180 | SAMN04487957_104179 | Putative glutathione S-transferase. | DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.740 |