Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO00344.1 | SDO35235.1 | SAMN04487957_10313 | SAMN04487957_105271 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MatE protein. | 0.581 |
SDO00344.1 | SDO35263.1 | SAMN04487957_10313 | SAMN04487957_105272 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MatE protein. | 0.581 |
SDO35150.1 | SDO35214.1 | SAMN04487957_105268 | SAMN04487957_105270 | Ribonuclease J. | Uncharacterized membrane protein. | 0.729 |
SDO35150.1 | SDO35235.1 | SAMN04487957_105268 | SAMN04487957_105271 | Ribonuclease J. | MatE protein. | 0.511 |
SDO35150.1 | SDO35263.1 | SAMN04487957_105268 | SAMN04487957_105272 | Ribonuclease J. | MatE protein. | 0.511 |
SDO35150.1 | purU-2 | SAMN04487957_105268 | SAMN04487957_105269 | Ribonuclease J. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.742 |
SDO35214.1 | SDO35150.1 | SAMN04487957_105270 | SAMN04487957_105268 | Uncharacterized membrane protein. | Ribonuclease J. | 0.729 |
SDO35214.1 | SDO35235.1 | SAMN04487957_105270 | SAMN04487957_105271 | Uncharacterized membrane protein. | MatE protein. | 0.776 |
SDO35214.1 | SDO35263.1 | SAMN04487957_105270 | SAMN04487957_105272 | Uncharacterized membrane protein. | MatE protein. | 0.776 |
SDO35214.1 | SDO35294.1 | SAMN04487957_105270 | SAMN04487957_105273 | Uncharacterized membrane protein. | glutaryl-CoA dehydrogenase. | 0.524 |
SDO35214.1 | purU-2 | SAMN04487957_105270 | SAMN04487957_105269 | Uncharacterized membrane protein. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.843 |
SDO35235.1 | SDO00344.1 | SAMN04487957_105271 | SAMN04487957_10313 | MatE protein. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.581 |
SDO35235.1 | SDO35150.1 | SAMN04487957_105271 | SAMN04487957_105268 | MatE protein. | Ribonuclease J. | 0.511 |
SDO35235.1 | SDO35214.1 | SAMN04487957_105271 | SAMN04487957_105270 | MatE protein. | Uncharacterized membrane protein. | 0.776 |
SDO35235.1 | SDO35263.1 | SAMN04487957_105271 | SAMN04487957_105272 | MatE protein. | MatE protein. | 0.994 |
SDO35235.1 | SDO35294.1 | SAMN04487957_105271 | SAMN04487957_105273 | MatE protein. | glutaryl-CoA dehydrogenase. | 0.583 |
SDO35235.1 | purU-2 | SAMN04487957_105271 | SAMN04487957_105269 | MatE protein. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.735 |
SDO35263.1 | SDO00344.1 | SAMN04487957_105272 | SAMN04487957_10313 | MatE protein. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.581 |
SDO35263.1 | SDO35150.1 | SAMN04487957_105272 | SAMN04487957_105268 | MatE protein. | Ribonuclease J. | 0.511 |
SDO35263.1 | SDO35214.1 | SAMN04487957_105272 | SAMN04487957_105270 | MatE protein. | Uncharacterized membrane protein. | 0.776 |
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