STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO28827.1Regulatory protein, luxR family. (136 aa)    
Predicted Functional Partners:
SDO65314.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.988
SDN89135.1
PAS fold-containing protein.
  
 0.979
SDN63404.1
Signal transduction histidine kinase.
  
 0.968
SDO13971.1
PAS domain S-box-containing protein.
  
 0.863
SDO28725.1
Hypothetical protein.
       0.801
SDO87663.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.787
SDO28415.1
Hypothetical protein.
       0.777
SDO28758.1
Hypothetical protein.
       0.773
SDO28794.1
Hypothetical protein.
       0.773
SDO28386.1
Protein of unknown function.
       0.768
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.