Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN63940.1 | SDO40376.1 | SAMN04487957_101228 | SAMN04487957_10627 | Hypothetical protein. | Chromosome segregation ATPase. | 0.434 |
SDN63940.1 | SDO59737.1 | SAMN04487957_101228 | SAMN04487957_108118 | Hypothetical protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.865 |
SDO31182.1 | SDO40376.1 | SAMN04487957_105135 | SAMN04487957_10627 | Hypothetical protein. | Chromosome segregation ATPase. | 0.434 |
SDO31182.1 | SDO59737.1 | SAMN04487957_105135 | SAMN04487957_108118 | Hypothetical protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.865 |
SDO40376.1 | SDN63940.1 | SAMN04487957_10627 | SAMN04487957_101228 | Chromosome segregation ATPase. | Hypothetical protein. | 0.434 |
SDO40376.1 | SDO31182.1 | SAMN04487957_10627 | SAMN04487957_105135 | Chromosome segregation ATPase. | Hypothetical protein. | 0.434 |
SDO40376.1 | SDO40408.1 | SAMN04487957_10627 | SAMN04487957_10628 | Chromosome segregation ATPase. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.991 |
SDO40376.1 | SDO59737.1 | SAMN04487957_10627 | SAMN04487957_108118 | Chromosome segregation ATPase. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.740 |
SDO40376.1 | xerC | SAMN04487957_10627 | SAMN04487957_106125 | Chromosome segregation ATPase. | Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.497 |
SDO40408.1 | SDO40376.1 | SAMN04487957_10628 | SAMN04487957_10627 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Chromosome segregation ATPase. | 0.991 |
SDO40408.1 | SDO59737.1 | SAMN04487957_10628 | SAMN04487957_108118 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.819 |
SDO40408.1 | ftsW | SAMN04487957_10628 | SAMN04487957_1089 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.439 |
SDO40408.1 | xerC | SAMN04487957_10628 | SAMN04487957_106125 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.477 |
SDO59737.1 | SDN63940.1 | SAMN04487957_108118 | SAMN04487957_101228 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Hypothetical protein. | 0.865 |
SDO59737.1 | SDO31182.1 | SAMN04487957_108118 | SAMN04487957_105135 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Hypothetical protein. | 0.865 |
SDO59737.1 | SDO40376.1 | SAMN04487957_108118 | SAMN04487957_10627 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Chromosome segregation ATPase. | 0.740 |
SDO59737.1 | SDO40408.1 | SAMN04487957_108118 | SAMN04487957_10628 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.819 |
SDO59737.1 | aat | SAMN04487957_108118 | SAMN04487957_108119 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.774 |
SDO59737.1 | bpt | SAMN04487957_108118 | SAMN04487957_108120 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.730 |
SDO59737.1 | ftsQ | SAMN04487957_108118 | SAMN04487957_1085 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.859 |
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