STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO57421.1PTS IIA-like nitrogen-regulatory protein PtsN. (154 aa)    
Predicted Functional Partners:
SDN65823.1
Phosphocarrier protein FPr; Belongs to the PEP-utilizing enzyme family.
 
 
 0.997
SDN65765.1
PTS system, fructose-specific IIC component.
 
 
 0.988
SDO57562.1
Phosphocarrier protein NPr.
 
 
 0.986
SDO57381.1
Putative sigma-54 modulation protein.
  
  
 0.959
SDO57527.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.958
SDN65795.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
 
 0.946
SDO57347.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.853
SDO19425.1
Phosphotransferase system, enzyme I, PtsP; Belongs to the PEP-utilizing enzyme family.
  
   
 0.772
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
  
 0.644
SDO57316.1
Lipopolysaccharide export system ATP-binding protein.
     
 0.629
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.