STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO64238.1ABC-2 type transport system permease protein. (253 aa)    
Predicted Functional Partners:
SDO64199.1
ABC-2 type transport system ATP-binding protein.
 
 0.982
SDO87817.1
ABC-2 type transport system ATP-binding protein.
 
 0.872
SDO64165.1
Hypothetical protein.
       0.865
SDO64274.1
Nucleoid-associated protein.
       0.794
SDN72651.1
Ribosome-dependent ATPase.
  
 
 0.636
SDO87741.1
Nitroreductase.
  
    0.621
SDO68531.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.616
SDN58698.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
    0.596
SDO10322.1
Uncharacterized conserved protein, tellurite resistance protein B (TerB) family.
       0.473
SDN72782.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
    
  0.442
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.