STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO65000.1SEC-C motif-containing protein. (608 aa)    
Predicted Functional Partners:
SDO60511.1
Protein of unknown function.
  
     0.773
SDO57247.1
Lipopolysaccharide export system protein LptC.
  
     0.766
SDO84013.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.764
SDO59625.1
Hemerythrin-like domain-containing protein.
  
     0.761
SDN85344.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.759
SDO90096.1
Hypothetical protein.
  
     0.757
SDO70695.1
Putative membrane protein.
  
     0.741
SDO89925.1
Hypothetical protein.
  
     0.737
SDO49493.1
Nuclease-related domain-containing protein.
  
     0.728
SDO77416.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
  
     0.728
Your Current Organism:
Halomonas shengliensis
NCBI taxonomy Id: 419597
Other names: CGMCC 1.6444, H. shengliensis, Halomonas shengliensis Wang et al. 2007, LMG 23897, LMG:23897, strain SL014B-85
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.