STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78193.1Iron complex outermembrane recepter protein. (605 aa)    
Predicted Functional Partners:
SEP78163.1
Transcriptional regulator, GntR family.
 
     0.892
SER00162.1
VirE N-terminal domain-containing protein.
  
     0.520
SER00028.1
Piwi domain-containing protein.
  
     0.516
SER00122.1
Primase C terminal 2 (PriCT-2).
  
     0.501
SEP78438.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.487
SEQ74505.1
Chromosome partitioning protein.
    
   0.470
SEP91359.1
Hypothetical protein.
  
 
   0.459
SEQ80689.1
Protein of unknown function.
  
 
   0.456
SEQ87917.1
Outer membrane protein TolC.
  
     0.454
SEQ70101.1
Regulatory protein, luxR family.
  
     0.451
Your Current Organism:
Hyunsoonleella jejuensis
NCBI taxonomy Id: 419940
Other names: DSM 21035, Flavobacteriaceae bacterium CNU004, H. jejuensis, Hyunsoonleella jejuensis Yoon et al. 2010 emend. Park et al. 2013, KCTC 22242, strain CNU004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.