Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEQ05317.1 | SEQ16701.1 | SAMN05421824_1033 | SAMN05421824_1336 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | B12 binding domain-containing protein. | 0.643 |
| SEQ05317.1 | SEQ35362.1 | SAMN05421824_1033 | SAMN05421824_1436 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | 0.693 |
| SEQ05317.1 | SEQ94885.1 | SAMN05421824_1033 | SAMN05421824_2646 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.738 |
| SEQ05317.1 | SEQ98083.1 | SAMN05421824_1033 | SAMN05421824_2739 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb6. | 0.867 |
| SEQ05317.1 | dnaG | SAMN05421824_1033 | SAMN05421824_2965 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.857 |
| SEQ05317.1 | lepA | SAMN05421824_1033 | SAMN05421824_0478 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.709 |
| SEQ05317.1 | nusA | SAMN05421824_1033 | SAMN05421824_0230 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.791 |
| SEQ05317.1 | rpoA | SAMN05421824_1033 | SAMN05421824_2164 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.923 |
| SEQ05317.1 | rpoB | SAMN05421824_1033 | SAMN05421824_1257 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.926 |
| SEQ05317.1 | rpoC | SAMN05421824_1033 | SAMN05421824_1258 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.915 |
| SEQ16701.1 | SEQ05317.1 | SAMN05421824_1336 | SAMN05421824_1033 | B12 binding domain-containing protein. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.643 |
| SEQ16701.1 | SEQ35362.1 | SAMN05421824_1336 | SAMN05421824_1436 | B12 binding domain-containing protein. | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | 0.534 |
| SEQ16701.1 | SEQ98083.1 | SAMN05421824_1336 | SAMN05421824_2739 | B12 binding domain-containing protein. | RNA polymerase Rpb6. | 0.679 |
| SEQ16701.1 | rpoA | SAMN05421824_1336 | SAMN05421824_2164 | B12 binding domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.656 |
| SEQ16701.1 | rpoB | SAMN05421824_1336 | SAMN05421824_1257 | B12 binding domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.691 |
| SEQ16701.1 | rpoC | SAMN05421824_1336 | SAMN05421824_1258 | B12 binding domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.649 |
| SEQ35362.1 | SEQ05317.1 | SAMN05421824_1436 | SAMN05421824_1033 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.693 |
| SEQ35362.1 | SEQ16701.1 | SAMN05421824_1436 | SAMN05421824_1336 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | B12 binding domain-containing protein. | 0.534 |
| SEQ35362.1 | SEQ98083.1 | SAMN05421824_1436 | SAMN05421824_2739 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | RNA polymerase Rpb6. | 0.525 |
| SEQ35362.1 | rpoA | SAMN05421824_1436 | SAMN05421824_2164 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.555 |
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