STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ12420.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
SEQ98109.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.695
SEP99980.1
Calcineurin-like phosphoesterase.
  
   0.641
queE
Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
   
   0.582
SEP73019.1
Beta-barrel assembly machine subunit BamA.
   
   0.521
SEQ06015.1
Surface antigen.
   
   0.521
SEQ72226.1
Surface antigen variable number repeat-containing protein.
   
   0.521
SER07535.1
Surface antigen variable number repeat-containing protein.
   
   0.521
SEP77679.1
Hypothetical protein; Manually curated.
   
   0.501
SEQ78329.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.480
SEQ41194.1
Hypothetical protein.
  
     0.466
Your Current Organism:
Hyunsoonleella jejuensis
NCBI taxonomy Id: 419940
Other names: DSM 21035, Flavobacteriaceae bacterium CNU004, H. jejuensis, Hyunsoonleella jejuensis Yoon et al. 2010 emend. Park et al. 2013, KCTC 22242, strain CNU004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.