STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ36896.1Peptidase family M23. (561 aa)    
Predicted Functional Partners:
SEQ36868.1
TonB-dependent Receptor Plug Domain.
       0.811
SEQ36806.1
Putative membrane protein.
       0.757
SEQ36839.1
Aspartyl protease.
       0.757
SEP82802.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.707
SEP90418.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.665
SEP71206.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
 
   0.529
SEQ39064.1
LysM domain-containing protein.
  
     0.513
SEQ73798.1
Protein of unknown function.
  
     0.499
SEQ87452.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
     0.499
SEQ96974.1
Outer membrane lipoprotein carrier protein LolA.
  
    0.484
Your Current Organism:
Hyunsoonleella jejuensis
NCBI taxonomy Id: 419940
Other names: DSM 21035, Flavobacteriaceae bacterium CNU004, H. jejuensis, Hyunsoonleella jejuensis Yoon et al. 2010 emend. Park et al. 2013, KCTC 22242, strain CNU004
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