STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msm_1000Methyl viologen-reducing hydrogenase, gamma subunit, MvhG; COG1941. (308 aa)    
Predicted Functional Partners:
Msm_0795
Heterodisulfide reductase, subunit B, HdrB; COG2048.
  
 0.999
Msm_0796
Heterodisulfide reductase, subunit C, HdrC; COG1150.
 
 0.999
Msm_0999
Methyl viologen-reducing hydrogenase, alpha subunit, MvhA; COG3259; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.999
Msm_1001
Methyl viologen-reducing hydrogenase, delta subunit, MvhD; COG1908.
 0.999
Msm_1336
Heterodisulfide reductase, subunit A, HdrA; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 0.999
Msm_1461
Methyl viologen-reducing hydrogenase, delta subunit, MvhD; COG1908.
 0.997
Msm_1124
Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA; COG3259; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.977
Msm_0998
Polyferredoxin, MvhB; COG1145.
  
  
 0.942
Msm_1121
Coenzyme F420-reducing hydrogenase, beta subunit, FrhB; COG1035.
  
 
 0.926
Msm_0082
Heterodisulfide reductase, subunit A, HdrA; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 
 0.869
Your Current Organism:
Methanobrevibacter smithii
NCBI taxonomy Id: 420247
Other names: M. smithii ATCC 35061, Methanobrevibacter smithii ATCC 35061, Methanobrevibacter smithii DSM 861, Methanobrevibacter smithii PS, Methanobrevibacter smithii str. ATCC 35061, Methanobrevibacter smithii strain ATCC 35061
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