STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msm_1285Conserved hypothetical protein Msm_1285. (420 aa)    
Predicted Functional Partners:
Msm_1286
3-octaprenyl-4-hydroxybenzoate carboxy-lyase, UbiD; COG0043.
       0.773
purE
Phosphoribosylaminoimidazole carboxylase (NCAIR mutase), PurE; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.773
Msm_1288
Conserved hypothetical membrane protein Msm_1288; COG5305.
       0.594
Msm_1289
GtrA-like surface polysaccharide biosynthesis protein, GtrA; COG2246.
       0.578
Msm_1290
Glycosyltransferase; Related to beta-glycosidases, GT2 family (CAZy); COG0463.
       0.400
Your Current Organism:
Methanobrevibacter smithii
NCBI taxonomy Id: 420247
Other names: M. smithii ATCC 35061, Methanobrevibacter smithii ATCC 35061, Methanobrevibacter smithii DSM 861, Methanobrevibacter smithii PS, Methanobrevibacter smithii str. ATCC 35061, Methanobrevibacter smithii strain ATCC 35061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.