STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msm_1305Adhesin-like protein. (2036 aa)    
Predicted Functional Partners:
Msm_1451
Predicted O-linked GlcNAc transferase; COG0457.
 
     0.734
Msm_1456
Conserved hypothetical protein Msm_1456.
  
     0.713
Msm_1385
Predicted acyltransferase; COG4801.
  
     0.673
Msm_0411
Adhesin-like protein.
  
     0.601
Msm_1599
SAM-dependent methyltransferase.
  
     0.598
Msm_0113
DNA helicase; COG0210.
  
     0.585
Msm_1734
Predicted thymidylate synthase, ThyA; COG0207.
  
     0.583
Msm_0047
Chloramphenicol O-acetyltransferase; COG4845.
  
     0.547
rad50
Purine NTPase involved in DNA repair, Rad50; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.
  
    0.539
Msm_0934
Predicted phosphatidylglycerophosphatase A-related protein; COG1267.
 
     0.539
Your Current Organism:
Methanobrevibacter smithii
NCBI taxonomy Id: 420247
Other names: M. smithii ATCC 35061, Methanobrevibacter smithii ATCC 35061, Methanobrevibacter smithii DSM 861, Methanobrevibacter smithii PS, Methanobrevibacter smithii str. ATCC 35061, Methanobrevibacter smithii strain ATCC 35061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.