Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH81780.1 | mntH | SAMN05421793_13424 | SAMN05421793_13425 | OmpA family protein. | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | 0.516 |
SEH89750.1 | mntH | SAMN05421793_14714 | SAMN05421793_13425 | Iron (metal) dependent repressor, DtxR family. | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | 0.498 |
atpE | mntH | SAMN05421793_12010 | SAMN05421793_13425 | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | 0.478 |
mntH | SEH81780.1 | SAMN05421793_13425 | SAMN05421793_13424 | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | OmpA family protein. | 0.516 |
mntH | SEH89750.1 | SAMN05421793_13425 | SAMN05421793_14714 | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | Iron (metal) dependent repressor, DtxR family. | 0.498 |
mntH | atpE | SAMN05421793_13425 | SAMN05421793_12010 | Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.478 |