STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptAOstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (209 aa)    
Predicted Functional Partners:
Mpe_A0149
Putative ATP-binding ABC transporter protein.
  
  
 0.975
Mpe_A3807
Putative transmembrane protein.
 
 
 0.972
lptD
Putative organic solvent tolerance transmembrane protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.847
Mpe_A0148
Putative RNA polymerase sigma N (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.836
Mpe_A0151
Thiol:disulfide interchange protein.
 
     0.789
lptE
Putative lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
  
 0.754
Mpe_A2564
Putative transmembrane protein.
  
  
 0.746
Mpe_A0147
N6-adenine-specific DNA methylase-like protein; Belongs to the methyltransferase superfamily.
 
     0.719
Mpe_A2956
Putative tolA-related transport transmembrane protein.
  
    0.701
flgC
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.683
Your Current Organism:
Methylibium petroleiphilum
NCBI taxonomy Id: 420662
Other names: M. petroleiphilum PM1, MTBE-degrading bacterium PM1, Methylibium petroleiphilum PM1, Methylibium petroleiphilum str. PM1, Methylibium petroleiphilum strain PM1, Rubrivivax gelatinosus PM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.