Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mpe_A0993 | Mpe_A1913 | Mpe_A0993 | Mpe_A1913 | Aliphatic nitrilase. | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | 0.801 |
Mpe_A0993 | Mpe_A3103 | Mpe_A0993 | Mpe_A3103 | Aliphatic nitrilase. | Glutamate synthase (NADH) large subunit. | 0.840 |
Mpe_A0993 | Mpe_A3478 | Mpe_A0993 | Mpe_A3478 | Aliphatic nitrilase. | Nitrilase. | 0.915 |
Mpe_A0993 | Mpe_A3745 | Mpe_A0993 | Mpe_A3745 | Aliphatic nitrilase. | Putative glutamic dehyrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.927 |
Mpe_A0993 | murI | Mpe_A0993 | Mpe_A1295 | Aliphatic nitrilase. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.807 |
Mpe_A1913 | Mpe_A0993 | Mpe_A1913 | Mpe_A0993 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | Aliphatic nitrilase. | 0.801 |
Mpe_A1913 | Mpe_A3103 | Mpe_A1913 | Mpe_A3103 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | Glutamate synthase (NADH) large subunit. | 0.924 |
Mpe_A1913 | Mpe_A3478 | Mpe_A1913 | Mpe_A3478 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | Nitrilase. | 0.801 |
Mpe_A1913 | Mpe_A3745 | Mpe_A1913 | Mpe_A3745 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | Putative glutamic dehyrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.909 |
Mpe_A1913 | murD | Mpe_A1913 | Mpe_A0460 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.900 |
Mpe_A1913 | murI | Mpe_A1913 | Mpe_A1295 | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.904 |
Mpe_A2704 | murI | Mpe_A2704 | Mpe_A1295 | Ham1 family protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.913 |
Mpe_A3103 | Mpe_A0993 | Mpe_A3103 | Mpe_A0993 | Glutamate synthase (NADH) large subunit. | Aliphatic nitrilase. | 0.840 |
Mpe_A3103 | Mpe_A1913 | Mpe_A3103 | Mpe_A1913 | Glutamate synthase (NADH) large subunit. | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | 0.924 |
Mpe_A3103 | Mpe_A3478 | Mpe_A3103 | Mpe_A3478 | Glutamate synthase (NADH) large subunit. | Nitrilase. | 0.840 |
Mpe_A3103 | Mpe_A3745 | Mpe_A3103 | Mpe_A3745 | Glutamate synthase (NADH) large subunit. | Putative glutamic dehyrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.995 |
Mpe_A3103 | murD | Mpe_A3103 | Mpe_A0460 | Glutamate synthase (NADH) large subunit. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.509 |
Mpe_A3103 | murI | Mpe_A3103 | Mpe_A1295 | Glutamate synthase (NADH) large subunit. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.539 |
Mpe_A3478 | Mpe_A0993 | Mpe_A3478 | Mpe_A0993 | Nitrilase. | Aliphatic nitrilase. | 0.915 |
Mpe_A3478 | Mpe_A1913 | Mpe_A3478 | Mpe_A1913 | Nitrilase. | Glutaminase-(asparagin-)ase; Belongs to the asparaginase 1 family. | 0.801 |
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