Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Mpe_A0205 | Mpe_A0322 | Conserved hypothetical protein. | Putative transmembrane protein. | 0.685 |
Mpe_A0205 | Mpe_A1102 | Conserved hypothetical protein. | Putative membrane protein. | 0.770 |
Mpe_A0205 | Mpe_A1158 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.758 |
Mpe_A0205 | Mpe_A1280 | Conserved hypothetical protein. | Putative membrane protein. | 0.758 |
Mpe_A0205 | Mpe_A1926 | Conserved hypothetical protein. | Putative membrane protein. | 0.531 |
Mpe_A0205 | Mpe_A3158 | Conserved hypothetical protein. | Hypothetical protein. | 0.750 |
Mpe_A0205 | Mpe_A3449 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.758 |
Mpe_A0205 | Mpe_A3630 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.772 |
Mpe_A0205 | Mpe_A3631 | Conserved hypothetical protein. | Putative proline-rich signal peptide protein. | 0.764 |
Mpe_A0205 | Mpe_A3827 | Conserved hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.744 |
Mpe_A0322 | Mpe_A0205 | Putative transmembrane protein. | Conserved hypothetical protein. | 0.685 |
Mpe_A0322 | Mpe_A1102 | Putative transmembrane protein. | Putative membrane protein. | 0.769 |
Mpe_A0322 | Mpe_A1158 | Putative transmembrane protein. | Conserved hypothetical protein. | 0.631 |
Mpe_A0322 | Mpe_A1280 | Putative transmembrane protein. | Putative membrane protein. | 0.497 |
Mpe_A0322 | Mpe_A3158 | Putative transmembrane protein. | Hypothetical protein. | 0.748 |
Mpe_A0322 | Mpe_A3630 | Putative transmembrane protein. | Conserved hypothetical protein. | 0.754 |
Mpe_A0322 | Mpe_A3631 | Putative transmembrane protein. | Putative proline-rich signal peptide protein. | 0.725 |
Mpe_A0322 | Mpe_A3827 | Putative transmembrane protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.687 |
Mpe_A1102 | Mpe_A0205 | Putative membrane protein. | Conserved hypothetical protein. | 0.770 |
Mpe_A1102 | Mpe_A0322 | Putative membrane protein. | Putative transmembrane protein. | 0.769 |
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