STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005865Putative rrna processing protein fcf2. (236 aa)    
Predicted Functional Partners:
BK809_0005284
Protein bfr-2.
   
 
 0.991
BK809_0006890
Putative U3 small nucleolar RNA-associated protein 11.
   
 
 0.990
BK809_0006410
Ribosome biogenesis protein bms1.
   
 
 0.988
BK809_0000843
Putative u3 small nucleolar ribonucleoprotein lcp5.
   
 
 0.987
BK809_0007911
U3 small nucleolar ribonucleoprotein IMP4.
   
   0.984
BK809_0004079
U3 small nucleolar RNA-associated protein 5.
   
 
 0.983
BK809_0004059
Putative small nucleolar ribonucleoprotein complex subunit.
   
 
 0.982
BK809_0006144
Putative WD repeat-containing protein.
   
 
 0.981
BK809_0002122
U3 small nucleolar RNA-associated protein 6.
   
 
 0.981
BK809_0002375
Putative rrna-processing protein fcf1.
   
 
 0.979
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.