STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005826Putative microsomal signal peptidase 12kda subunit. (257 aa)    
Predicted Functional Partners:
BK809_0004825
Alanine--glyoxylate aminotransferase 1.
  
 0.619
BK809_0004812
Non-specific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.582
BK809_0007372
Peroxisomal targeting signal receptor.
    
  0.576
BK809_0001239
Malate synthase; Belongs to the malate synthase family.
  
 
 0.575
BK809_0003916
Putative D-lactate dehydrogenase, mitochondrial.
  
 0.573
BK809_0004769
Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.
    
 0.566
BK809_0004501
rRNA biogenesis protein rrp5.
  
 
  0.550
BK809_0003546
GMP synthase [glutamine-hydrolyzing].
    
 0.528
BK809_0003815
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
    
 0.526
BK809_0007730
Peroxisomal membrane protein PAS20.
     
 0.518
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.