STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005311Putative peroxisomal biogenesis factor. (234 aa)    
Predicted Functional Partners:
BK809_0005048
Peroxisomal biogenesis factor 19.
   
 0.977
BK809_0006224
Peroxisomal membrane protein PER10.
    
 0.921
BK809_0007730
Peroxisomal membrane protein PAS20.
   
 0.916
BK809_0002075
Peroxisome assembly protein 12.
   
 0.864
BK809_0005899
Peroxisomal biogenesis factor 3.
   
 0.860
BK809_0006507
Mitochondrial fission 1 protein; Has a role in mitochondrial fission.
    
 0.854
BK809_0001803
Peroxisomal membrane protein PEX16.
   
 
 0.813
BK809_0007417
Peroxisomal membrane protein 4.
     
 0.786
BK809_0003968
Peroxisomal membrane protein PMP47A; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 0.754
BK809_0007648
Peroxisomal biogenesis factor 6; Belongs to the AAA ATPase family.
    
 0.751
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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