STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000809Putative pre-mrna branch site protein p14. (115 aa)    
Predicted Functional Partners:
BK809_0001169
Putative pre-mrna-splicing factor rse1.
    
 0.998
BK809_0005073
PHD finger-like domain-containing protein 5B.
   
 0.998
BK809_0007548
U2 snRNP component prp10.
   
 0.998
BK809_0004380
Pre-mRNA-splicing factor.
    
 0.993
BK809_0005923
Splicing factor 3B subunit 4.
    
 0.992
BK809_0003145
Pre-mRNA-splicing factor sap62.
   
 0.989
BK809_0007206
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.985
BK809_0007496
Small nuclear ribonucleoprotein G.
   
  0.977
BK809_0008032
MFAP1 domain-containing protein.
   
   0.972
BK809_0002620
Putative pre-mrna splicing factor prp1.
    
   0.971
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.