STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002625PXA domain-containing protein. (1124 aa)    
Predicted Functional Partners:
BK809_0001639
RAD50-interacting protein 1.
   
 
  0.572
BK809_0004781
E3 ubiquitin-protein ligase.
    
  0.528
BK809_0007433
Polarized growth protein rax2.
    
  0.528
BK809_0007137
PXA domain-containing protein.
   
 
 0.516
BK809_0006995
Synaptobrevin-like protein; Belongs to the synaptobrevin family.
     
 0.503
BK809_0004046
Vesicle transport v-SNARE protein vti1.
   
 
 0.501
BK809_0002873
Sorting nexin-12.
      
 0.489
BK809_0003196
Putative adp-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
    
  0.485
BK809_0004274
t-SNARE affecting a late Golgi compartment protein 1.
    
 0.485
BK809_0003039
Uncharacterized protein.
    
  0.485
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.