STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002497Glyco_hydro_cc domain-containing protein. (506 aa)    
Predicted Functional Partners:
BK809_0004191
Putative mitochondrial 54s ribosomal protein 47; Belongs to the universal ribosomal protein uL16 family.
   
 0.823
BK809_0005205
Putative hsp70 nucleotide exchange factor.
   
 0.595
BK809_0000753
Putative 60s ribosomal protein l10.
   
 0.595
BK809_0001826
Uncharacterized protein.
   
 0.595
BK809_0002632
GTPase-activating protein gyp1.
    
   0.519
BK809_0004567
37S ribosomal protein MRP17, mitochondrial.
    
   0.519
BK809_0004868
39S ribosomal protein L46, mitochondrial.
    
   0.519
BK809_0005097
54S ribosomal protein L51, mitochondrial.
    
   0.519
BK809_0001583
37S ribosomal protein S23, mitochondrial.
    
   0.519
BK809_0003490
54S ribosomal protein L27, mitochondrial.
    
   0.519
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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