STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0006159Uncharacterized protein. (401 aa)    
Predicted Functional Partners:
BK809_0001318
Acetyl-CoA carboxylase.
   
 0.652
BK809_0005650
Endocytosis protein end4.
    
 0.566
BK809_0006711
Putative mitochondrial processing peptidase beta; Belongs to the peptidase M16 family.
   
 0.554
BK809_0003455
26S proteasome regulatory subunit rpn11.
    
  0.538
BK809_0002332
N-acetyltransferase 9-like protein.
 
      0.534
BK809_0005404
Ubiquitin carboxyl-terminal hydrolase.
    
  0.528
BK809_0005921
USP domain-containing protein.
    
  0.528
BK809_0003430
Heavy metal tolerance protein.
    
 0.515
BK809_0005763
Heavy metal tolerance protein.
    
 0.515
BK809_0005982
Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
    
  0.509
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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