STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0006718Putative ATP-dependent helicase. (1505 aa)    
Predicted Functional Partners:
BK809_0006563
Regulator of nonsense transcripts 2.
   
 0.970
BK809_0003133
Regulator of nonsense transcripts 3A.
    
 0.967
BK809_0006213
Uncharacterized protein.
    
 0.919
BK809_0000010
Telomerase-binding protein EST1A.
    
 0.892
BK809_0003715
Putative rna-binding protein 8a.
    
 0.888
BK809_0005847
mRNA-decapping enzyme subunit 1.
    
 0.872
BK809_0001177
Protein SMG7.
    
 0.865
BK809_0003838
Eukaryotic peptide chain release factor GTP-binding subunit.
    
 0.850
BK809_0005891
Nuclear cap-binding protein subunit 1.
    
 0.829
BK809_0003368
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.827
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.