STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0006917Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
BK809_0001513
DNA polymerase delta small subunit.
    
 0.622
BK809_0008074
DNA polymerase.
   
 0.621
BK809_0001886
DNA repair protein rad16.
    
 0.620
BK809_0007206
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.605
BK809_0004345
Histone acetyltransferase type B subunit 2.
    
  0.595
BK809_0002207
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.593
BK809_0007496
Small nuclear ribonucleoprotein G.
    
  0.579
BK809_0007895
Small nuclear ribonucleoprotein Sm D2.
    
 0.564
BK809_0006761
RanBD1 domain-containing protein.
    
 0.562
BK809_0003139
DNA replication ATP-dependent helicase DNA2.
    
  0.557
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.