STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0006980ATP-dependent RNA helicase DBP2. (102 aa)    
Predicted Functional Partners:
BK809_0007665
Putative nucleolin protein nsr1.
   
 
 0.927
BK809_0000585
Pescadillo-like protein.
   
 0.915
BK809_0003018
Nuclear GTP-binding protein NUG1.
  
 0.910
BK809_0006979
Putative hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 2.
 
 
    0.874
BK809_0004810
ATP-dependent RNA helicase mtr4.
   
 0.860
BK809_0004454
rRNA-processing protein EBP2.
   
 0.856
BK809_0001011
Putative nucleolar protein nop58.
  
 
 0.853
BK809_0007257
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.850
BK809_0001346
THO complex subunit 4-A.
    
 0.849
BK809_0001993
RNA helicase.
 
 
0.842
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.