STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0006926Ribosomal RNA-processing protein 7. (349 aa)    
Predicted Functional Partners:
BK809_0004059
Putative small nucleolar ribonucleoprotein complex subunit.
   
 0.998
BK809_0002166
U3 small nucleolar RNA-associated protein 22.
   
 0.998
BK809_0005708
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.996
BK809_0002505
Putative U3 small nucleolar RNA-associated protein 18.
   
 0.996
BK809_0006410
Ribosome biogenesis protein bms1.
   
 0.996
BK809_0004501
rRNA biogenesis protein rrp5.
   
 0.996
BK809_0003926
Periodic tryptophan protein 2-like protein.
   
 0.996
BK809_0002665
U3 small nucleolar RNA-associated protein 4.
   
 0.995
BK809_0006144
Putative WD repeat-containing protein.
   
 0.995
BK809_0000955
U3 small nucleolar RNA-associated protein 10.
   
 0.995
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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