STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0001040General negative regulator of transcription subunit 3. (635 aa)    
Predicted Functional Partners:
BK809_0003093
Putative cell differentiation protein rcd1.
    
 0.996
BK809_0006258
CCR4-NOT transcription complex subunit 1.
    
 0.996
BK809_0005961
Poly(A) ribonuclease pop2.
    
 0.989
BK809_0003829
General negative regulator of transcription subunit 4.
   
 0.983
BK809_0002156
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.979
BK809_0005571
General negative regulator of transcription subunit 2.
    
 0.977
BK809_0005695
Coupling of ubiquitin conjugation to ER degradation protein 1.
    
 0.966
BK809_0000426
Putative topoisomerase ii associated protein.
   
 
 0.957
BK809_0002774
Putative atp-dependent rna helicase dhh1; Belongs to the DEAD box helicase family.
   
 0.938
BK809_0006900
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.867
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.